Angiuoli, Samuel : rechercher sur Z-Library

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1

CloVR-16S: Phylogenetic microbial community composition analysis based on 16S ribosomal RNA amplicon sequencing – standard operating procedure, version 1.1

White, James, Fricke, W. Florian, White, James, Arze, Cesar, Matalka, Malcolm, Team, The CloVR, White, Owen, Angiuoli, Samuel

Journal:

Bioentrepreneur

Année:

2011

Langue:

english

Fichier:

PDF, 3.37 MB

english, 2011

2

Improving pan-genome annotation using whole genome multiple alignment

Samuel V Angiuoli, Julie C Dunning Hotopp, Steven L Salzberg, Hervé Tettelin

Journal:

BMC Bioinformatics

Année:

2011

Langue:

english

Fichier:

PDF, 1.02 MB

english, 2011

3

CloVR: A virtual machine for automated and portable sequence analysis from the desktop using cloud computing

Samuel V Angiuoli, Malcolm Matalka, Aaron Gussman, Kevin Galens, Mahesh Vangala, David R Riley, Cesar Arze, James R White, Owen White, W Florian Fricke

Journal:

BMC Bioinformatics

Année:

2011

Langue:

english

Fichier:

PDF, 856 KB

english, 2011

4

Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii

Carlton, Jane M., Angiuoli, Samuel V., Suh, Bernard B., Kooij, Taco W., Pertea, Mihaela, Silva, Joana C., Ermolaeva, Maria D., Allen, Jonathan E., Selengut, Jeremy D., Koo, Hean L.

Journal:

Année:

2002

Langue:

english

Fichier:

PDF, 236 KB

english, 2002

5

Comparative genomics of the neglected human malaria parasite Plasmodium vivax

Angiuoli, Samuel V., Merino, Emilio F., Amedeo, Paolo, Carlton, Jane M., Adams, John H., Silva, Joana C., Bidwell, Shelby L., Lorenzi, Hernan, Caler, Elisabet, Crabtree, Jonathan

Journal:

Année:

2008

Langue:

english

Fichier:

PDF, 2.62 MB

english, 2008

6

The minimum information about a genome sequence (MIGS) specification

Field, Dawn, Garrity, George, Gray, Tanya, Morrison, Norman, Selengut, Jeremy, Sterk, Peter, Tatusova, Tatiana, Thomson, Nicholas, Allen, Michael J, Angiuoli, Samuel V

Journal:

Nature Biotechnology

Année:

2008

Langue:

english

Fichier:

PDF, 770 KB

english, 2008

7

CloVR-ITS: Automated internal transcribed spacer amplicon sequence analysis pipeline for the characterization of fungal microbiota

James Robert White, Cynthia Maddox, Owen White, Samuel V Angiuoli…

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 355 KB

english, 2013

8

Genomic analyses of gynaecologic carcinosarcomas reveal frequent mutations in chromatin remodelling genes

Jones, Siân, Stransky, Nicolas, McCord, Christine L., Cerami, Ethan, Lagowski, James, Kelly, Devon, Angiuoli, Samuel V., Sausen, Mark, Kann, Lisa, Shukla, Manish, Makar, Rosemary, Wood, Laura D., Diaz

Journal:

Nature Communications

Année:

2014

Langue:

english

Fichier:

PDF, 278 KB

english, 2014

9

Toward an Online Repository of Standard Operating Procedures (SOPs) for (Meta)genomic Annotation

Angiuoli, Samuel V., Gussman, Aaron, Klimke, William, Cochrane, Guy, Field, Dawn, Garrity, George M., Kodira, Chinnappa D., Kyrpides, Nikos, Madupu, Ramana, Markowitz, Victor, Tatusova, Tatiana, Thoms

Journal:

Omics A Journal of Integrative Biology

Année:

2008

Langue:

english

Fichier:

PDF, 71 KB

english, 2008

10

Toward a Standards-Compliant Genomic and Metagenomic Publication Record

Garrity, George M., Field, Dawn, Kyrpides, Nikos, Hirschman, Lynette, Sansone, Susanna-Assunta, Angiuoli, Samuel, Cole, James R., Glöckner, Frank Oliver, Kolker, Eugene, Kowalchuk, George, Moran, Mary

Journal:

Omics A Journal of Integrative Biology

Année:

2008

Langue:

english

Fichier:

PDF, 130 KB

english, 2008

11

Comparative Genomics of Emerging Human Ehrlichiosis Agents

Dunning Hotopp, Julie C., Lin, Mingqun, Madupu, Ramana, Crabtree, Jonathan, Angiuoli, Samuel V., Eisen, Jonathan, Seshadri, Rekha, Ren, Qinghu, Wu, Martin, Utterback, Teresa R., Smith, Shannon, Lewis,

Journal:

Année:

2006

Langue:

english

Fichier:

PDF, 751 KB

english, 2006

12

Neisseria meningitidis is structured in clades associated with restriction modification systems that modulate homologous recombination

Sonia Budroni, Emilio Siena, Julie C. Dunning Hotopp, Kate L. Seib, Davide Serruto, Chiara Nofroni, Maurizio Comanducci, David R. Riley, Sean C. Daugherty, Samuel V. Angiuoli, Antonello Covacci, Maria

Journal:

Proceedings of the National Academy of Sciences

Année:

2011

Langue:

english

Fichier:

PDF, 1.67 MB

english, 2011

13

CloVR-Comparative: automated, cloud-enabled comparative microbial genome sequence analysis pipeline

Agrawal, Sonia, Arze, Cesar, Adkins, Ricky S., Crabtree, Jonathan, Riley, David, Vangala, Mahesh, Galens, Kevin, Fraser, Claire M., Tettelin, Hervé, White, Owen, Angiuoli, Samuel V., Mahurkar, Anup, F

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 2.17 MB

english, 2017

14

Correction: Comparative Genomics of Emerging Human Ehrlichiosis Agents

Dunning Hotopp, Julie C., Lin, Mingqun, Madupu, Ramana, Crabtree, Jonathan, Angiuoli, Samuel V., Eisen, Jonathan A., Seshadri, Rekha, Ren, Qinghu, Wu, Martin, Utterback, Teresa R., Smith, Shannon, Lew

Journal:

Année:

2006

Langue:

english

Fichier:

PDF, 33 KB

english, 2006

15

Regarding the Congruence Between 2 Circulating Tumor DNA Sequencing Assays

Angiuoli, Samuel V., White, James R., Jones, Siân

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 41 KB

english, 2018

16

CloVR-Metagenomics: Functional and taxonomic microbial community characterization from metagenomic whole-genome shotgun (WGS) sequences – standard operating procedure, version 1.0

Fricke, W. Florian, White, James, Arze, Cesar, Matalka, Malcom, Team, The CloVR, White, Owen, Angiuoli, Samuel

Journal:

Bioentrepreneur

Année:

2011

Langue:

english

Fichier:

PDF, 165 KB

english, 2011

17

Cunningham: a BLAST Runtime Estimator

White, James, White, James, Matalka, Malcolm, Fricke, W. Florian, Angiuoli, Samuel

Journal:

Bioentrepreneur

Année:

2011

Langue:

english

Fichier:

PDF, 292 KB

english, 2011

18

CloVR-16S: Phylogenetic microbial community composition analysis based on 16S ribosomal RNA amplicon sequencing – standard operating procedure, version 1.0

Fricke, W. Florian, White, James, Arze, Cesar, Matalka, Malcolm, Team, The CloVR, White, Owen, Angiuoli, Samuel

Journal:

Bioentrepreneur

Année:

2011

Langue:

english

Fichier:

PDF, 584 KB

english, 2011

19

CloVR-Metagenomics: Functional and taxonomic microbial community characterization from metagenomic whole-genome shotgun (WGS) sequences – standard operating procedure, version 1.0

White, James, Fricke, W. Florian, White, James, Arze, Cesar, Matalka, Malcom, Team, The CloVR, White, Owen, Angiuoli, Samuel

Journal:

Bioentrepreneur

Année:

2011

Langue:

english

Fichier:

PDF, 164 KB

english, 2011

20

Cunningham: a BLAST Runtime Estimator

White, James, Matalka, Malcolm, Fricke, W. Florian, Angiuoli, Samuel

Journal:

Bioentrepreneur

Année:

2011

Langue:

english

Fichier:

PDF, 292 KB

english, 2011

21

CloVR-Metagenomics: Functional and taxonomic microbial community characterization from metagenomic whole-genome shotgun (WGS) sequences – standard operating procedure, version 1.0

White, James, Arze, Cesar, Matalka, Malcolm, Team, The CloVR, Angiuoli, Samuel, Fricke, W. Florian

Journal:

Bioentrepreneur

Année:

2011

Langue:

english

Fichier:

PDF, 164 KB

english, 2011

22

CloVR-Microbe: Assembly, gene finding and functional annotation of raw sequence data from single microbial genome projects – standard operating procedure, version 1.0

White, Owen, Angiuoli, Samuel, Fricke, W. Florian, Galens, Kevin, White, James, Arze, Cesar, Matalka, Malcolm, Gwinn Giglio, Michelle, Team, The CloVR

Journal:

Bioentrepreneur

Année:

2011

Langue:

english

Fichier:

PDF, 189 KB

english, 2011

23

CloVR-16S: Phylogenetic microbial community composition analysis based on 16S ribosomal RNA amplicon sequencing – standard operating procedure, version 1.0

Fricke, W. Florian, White, James, Arze, Cesar, Matalka, Malcolm, Team, The CloVR, White, Owen, Angiuoli, Samuel

Journal:

Bioentrepreneur

Année:

2011

Langue:

english

Fichier:

PDF, 584 KB

english, 2011

24

CloVR-Microbe: Assembly, gene finding and functional annotation of raw sequence data from single microbial genome projects – standard operating procedure, version 1.0

White, James, Galens, Kevin, White, James, Arze, Cesar, Matalka, Malcolm, Gwinn Giglio, Michelle, Team, The CloVR, Angiuoli, Samuel, Fricke, W. Florian

Journal:

Bioentrepreneur

Année:

2011

Langue:

english

Fichier:

PDF, 188 KB

english, 2011

25

CloVR-Microbe: Assembly, gene finding and functional annotation of raw sequence data from single microbial genome projects – standard operating procedure, version 1.0

White, James, White, Owen, Angiuoli, Samuel, Fricke, W. Florian, Galens, Kevin, White, James, Arze, Cesar, Matalka, Malcolm, Gwinn Giglio, Michelle, Team, The CloVR

Journal:

Bioentrepreneur

Année:

2011

Langue:

english

Fichier:

PDF, 188 KB

english, 2011

26

CloVR-16S: Phylogenetic microbial community composition analysis based on 16S ribosomal RNA amplicon sequencing – standard operating procedure, version 1.1

Fricke, W. Florian, White, James, Arze, Cesar, Matalka, Malcolm, White, Owen, Angiuoli, Samuel

Journal:

Bioentrepreneur

Année:

2011

Langue:

english

Fichier:

PDF, 3.37 MB

english, 2011

27

CloVR-16S: Phylogenetic microbial community composition analysis based on 16S ribosomal RNA amplicon sequencing – standard operating procedure, version1.0

White, James, Arze, Cesar, Matalka, Malcolm, Team, The CloVR, Angiuoli, Samuel, Fricke, W. Florian

Journal:

Bioentrepreneur

Année:

2011

Langue:

english

Fichier:

PDF, 584 KB

english, 2011

28

Cunningham: a BLAST Runtime Estimator

White, James, Matalka, Malcolm, Fricke, W. Florian, Angiuoli, Samuel

Journal:

Bioentrepreneur

Année:

2011

Fichier:

PDF, 292 KB

2011

29

CloVR-Microbe: Assembly, gene finding and functional annotation of raw sequence data from single microbial genome projects – standard operating procedure, version 1.0

White, James, Galens, Kevin, White, James, Arze, Cesar, Matalka, Malcolm, Gwinn Giglio, Michelle, Team, The CloVR, Angiuoli, Samuel, Fricke, W. Florian

Journal:

Bioentrepreneur

Année:

2011

Fichier:

PDF, 188 KB

2011

30

CloVR-Metagenomics: Functional and taxonomic microbial community characterization from metagenomic whole-genome shotgun (WGS) sequences – standard operating procedure, version 1.0

White, James, Fricke, W. Florian, White, James, Arze, Cesar, Matalka, Malcom, Team, The CloVR, White, Owen, Angiuoli, Samuel

Journal:

Bioentrepreneur

Année:

2011

Fichier:

PDF, 164 KB

2011

31

Cunningham: a BLAST Runtime Estimator

White, James, White, James, Matalka, Malcolm, Fricke, W. Florian, Angiuoli, Samuel

Journal:

Bioentrepreneur

Année:

2011

Fichier:

PDF, 292 KB

2011

32

CloVR-16S: Phylogenetic microbial community composition analysis based on 16S ribosomal RNA amplicon sequencing – standard operating procedure, version1.0

White, James, Arze, Cesar, Matalka, Malcolm, Team, The CloVR, Angiuoli, Samuel, Fricke, W. Florian

Journal:

Bioentrepreneur

Année:

2011

Fichier:

PDF, 584 KB

2011

33

CloVR-16S: Phylogenetic microbial community composition analysis based on 16S ribosomal RNA amplicon sequencing – standard operating procedure, version 1.0

Fricke, W. Florian, White, James, Arze, Cesar, Matalka, Malcolm, Team, The CloVR, White, Owen, Angiuoli, Samuel

Journal:

Bioentrepreneur

Année:

2011

Fichier:

PDF, 584 KB

2011

34

CloVR-Microbe: Assembly, gene finding and functional annotation of raw sequence data from single microbial genome projects – standard operating procedure, version 1.0

White, James, White, Owen, Angiuoli, Samuel, Fricke, W. Florian, Galens, Kevin, White, James, Arze, Cesar, Matalka, Malcolm, Gwinn Giglio, Michelle, Team, The CloVR

Journal:

Bioentrepreneur

Année:

2011

Fichier:

PDF, 188 KB

2011

35

CloVR-Microbe: Assembly, gene finding and functional annotation of raw sequence data from single microbial genome projects – standard operating procedure, version 1.0

White, Owen, Angiuoli, Samuel, Fricke, W. Florian, Galens, Kevin, White, James, Arze, Cesar, Matalka, Malcolm, Gwinn Giglio, Michelle, Team, The CloVR

Journal:

Bioentrepreneur

Année:

2011

Fichier:

PDF, 189 KB

2011

36

CloVR-Metagenomics: Functional and taxonomic microbial community characterization from metagenomic whole-genome shotgun (WGS) sequences – standard operating procedure, version 1.0

White, James, Arze, Cesar, Matalka, Malcolm, Team, The CloVR, Angiuoli, Samuel, Fricke, W. Florian

Journal:

Bioentrepreneur

Année:

2011

Fichier:

PDF, 164 KB

2011

37

CloVR-16S: Phylogenetic microbial community composition analysis based on 16S ribosomal RNA amplicon sequencing – standard operating procedure, version 1.1

White, James, Fricke, W. Florian, White, James, Arze, Cesar, Matalka, Malcolm, Team, The CloVR, White, Owen, Angiuoli, Samuel

Journal:

Bioentrepreneur

Année:

2011

Fichier:

PDF, 3.37 MB

2011

38

CloVR-16S: Phylogenetic microbial community composition analysis based on 16S ribosomal RNA amplicon sequencing – standard operating procedure, version 1.1

Fricke, W. Florian, White, James, Arze, Cesar, Matalka, Malcolm, White, Owen, Angiuoli, Samuel

Journal:

Bioentrepreneur

Année:

2011

Fichier:

PDF, 3.37 MB

2011

39

CloVR-16S: Phylogenetic microbial community composition analysis based on 16S ribosomal RNA amplicon sequencing – standard operating procedure, version 1.0

Fricke, W. Florian, White, James, Arze, Cesar, Matalka, Malcolm, Team, The CloVR, White, Owen, Angiuoli, Samuel

Journal:

Bioentrepreneur

Année:

2011

Fichier:

PDF, 584 KB

2011